Nah, in two of the three Gospels that contain the story, the storm only calms after Jesus gets in the boat. One of them adds a bit where Peter walks out into the storm to meet him. In the third, the boat is just… instantly at its destination once Jesus boards, with no mention of the storm calming.
You might be confusing the separate instance of Jesus sleeping in a boat during a storm and commanding the waters to be still after the disciples wake him.
House of Leaves by Mark Z. Danielewski.